Imprinted Gene Databases

Sus scrofa: CD81

CD81 molecule
Species Gene Aliases Location Status Expressed Allele
Homo sapiens CD81 S5.7, TAPA1, TSPAN28  11p15.5  Not Imprinted Biallelic
Mus musculus Cd81 Tapa1, Tapa-1, Tspan28  7 69.3 cM  Imprinted Maternal
Bos taurus CD81   29  Not Imprinted Biallelic
Sus scrofa CD81     Not Imprinted Biallelic

Options

  • Reverse Complement:
  • Margin:
  • Show CpG islands: *
    %GC:
    Obs/Exp:
    Length:
  • Show CpG sites:
  • Bisulfite treat:
    Replace C with hyphen:
    Potential primer sites:

Key

  • Non-coding: acgtacgt
  • Exon: AGCTACGT
  • Primer site: acgtacgt
  • CpG island: acgtacgt
  • CpG: **

Export

as FASTA / as RTF (Word)

*CpG island algorithm based on that described in: Takai D and Jones PA. Comprehensive analysis of CpG islands in human chromoseme 21 and 22. PNAS 2002 99(6):3740-5. For more options, visit the CpG Island Searcher.

1      ttccttcctc ccaacagttc cccctctaca gcagagaagg gggatttagc ctacaaacca     60
61     ccgaccctat ggcttcctgt ggccacagtg ccagcggcct ctgctctggg gccctgatgg    120
121    catcaaatcg ccacccctct ccttgtcctg gcagcaaaga cttgggatcc cctccatggg    180
181    gtactgggat gtgcttgggg tctggcgagg cctctgggca cacttaccaa atcacgtaca    240
241    ggacttcggt taaattgtgc ttcgggttta cagtgcttct ttggcacaag tatgtcccat    300
301    gcagtgtttg ggacacactc agaccaaaga aatacctgtg gtgcctccga atgcacgtga    360
361    accaggtgtc ctgcgtcgta ccaagcaacc tgtcctggag cctcactgca gtggtgctgg    420
421    caggaggtcc cccggacgca ggggcctgtg agccccacct ggagggaacc ctcggccgcc    480
481    gaccccgccg agggggtggt ccggcatccg tctctccctg tgtgtctggt gtgggggggt    540
541    tcgcaccacc gccgggcctg gggccgcaag taacccctgc ccttctcttt ccccagctgg    600
601    ctggaggcgt gatcctgggc gtggccctgt ggcttcgcca cgacccccag actaccagcc    660
661    tcctctacct ggagctcgga gacaagcccg cacccaatac cttctatgtg ggtaagtgca    720
721    cggggcaggc tgaggaccct ggcccagtct gggcgagccc gcaggggcgt ctgaccgtaa    780
781    gctcagagag gctgcagaca ggtagtcagg gagggcttcc tggaggaggc ggggccaagc    840
841    cagctccgag gaagccaggg agcaggcggg gtcctgtgag ccagggtacc tggaggatcc    900
901    aggcaagcct ggctcccctc cggacttggt ctggtgcctg gctgggctgg gggtggcccc    960
961    aggaagggtg tgtggctggt tgggacccca ccagatcgac tcctctgggg cagctggcag   1020
1021   gggcaggggc gctgtgtcat gtggcgggta tttcagggca ggcctcctgg gaaggggtgg   1080
1081   ggctggatgc ttgggcagca gaactagcag ctgaggcttg aggagcccag agcccagaac   1140
1141   cgtgggggat ggagactgca ggcttgggcc cctgcctcct gggcaccagc tgcacccctc   1200
1201   tgggcccctc agggcatctg ttccctcagg ccgaggtggg tgttggagca ggcatttcaa   1260
1261   ccccccgacc ctggccactc accaggtgcc acatcaggcc cagcagcggc ccctgccagc   1320
1321   tctctgtagg accagcgcca gctattggac cgcccggcag gctggcaccc cctgcccttg   1380
1381   ggtttttctt tctggctcca tgcagaccgg gctgccaggg aggcagggag cagatggggt   1440
1441   ccggacagag gctctttgtc tgacttcagg aagcagggtg ggttagctgg gcccgctcag   1500
1501   caccccgggc gacgccgcag ggcccaggag ggtcccccgc cttacttgcc agagccaggc   1560
1561   ccacaggctc tagacagaag cccagcaccc tggggaggcc tgtggttgag cctgggaggg   1620
1621   gctgtgggtc aggcacctgc ttcgcagcct ctcgtaggac cttcccgggc acttccactc   1680
1681   cggggagggt aggagacctg tgcccaagtg aggagccccc cagggtgagg cttcccccca   1740
1741   gcagctccgc ctggcttttg ctgagcccag cggtggcaaa ggctggccag gcagggagga   1800
1801   tgggcccttg gcaccagagc cctgggaccc attgtcctag gctcctgaag ccctagcctt   1860
1861   gtggagccgt gtaaccacgg cgacgggggt gggcctgggt ctgctggaag gcctggggct   1920
1921   gagggaggtc cttggagaga tatcgtggtc agtgtttcag gggcgagggc cctgtcctgg   1980
1981   tgggctctgg gcaccgagaa gggccgcatg gccagcagtc cctactgcca tgcgccccaa   2040
2041   ccaccaggcc gcctcgtcca gcaggctcca gcccccaggg tcagggcctc agaagccaga   2100
2101   cagagccccc tcctccaaag agaacagcca aacttcacac acacacacac acccccgtag   2160
2161   ccaggtcctc tgcaccgcgg cgggggtgat cctgctcggc cccaccaaga agccccggag   2220
2221   gcttgcggga accagagcgg gtccaggcgg gcggtcgtgc tgagttctgc gaccacccat   2280
2281   catgggcatc cctgatgatg tttgtggggt tcctgggctg ctacggggcc atccaggagt   2340
2341   cacag                                                               2345